Table 9 Structure of the haplotype library under different marker densities when adjusting parameters according to data structure for chromosome 1 in the KE DH lines
DensityNumber of BlocksAverage block length
(# of SNPs on full array)Haplotypes per BlockCoverage (%)
Every SNP4742615101.495.0
Every 2nd SNP4742720108.195.1
Every 5th SNP4812557115.495.1
Every 10th SNP5202174142.795.8
Every 40th SNP (MCMB = 125)5222056172.997.9
Every 40th SNP (MCMB = 250)4042287166.096.6