Table 1 Summary of all simulations
Number of
scenarioDataset
(number of SNPs)Sample size
of training setCausal SNPs
(number and location)Distribution
of effectsHeritabilitySimulation
modelMethods
1All 22 chromosomes600030 in HLAGaussian0.5ADDC+T
30 in allPLR
(281,122 SNPs)300 in allLaplace0.8COMPPLR3
3000 in all(T-Trees)
2Chromosome 6 onlyaaaaADDC+T
(18,941 SNPs)PLR
3All 22 chromosomes1000300 in allaaaa
(281,122 SNPs)2000
3000
4000
5000
  • a Parameters are the same as the ones in the upper box.