Table 2 Comparison of estimated allele substitution effects from different analyses with estimates from the joint statistical analysis using single phenotype records in scenarios with low and high diversity (values are averages across the five replicates)
AnalysisaLow diversityHigh diversity
CorrelationRegressionCorrelationRegression
Separate A0.711.090.651.10
Separate B0.711.090.651.10
Separate C0.711.090.651.11
Separate D0.711.090.641.10
PEC1.001.001.001.00
PECwithin chromosome0.990.980.970.95
PEV0.960.800.960.89
LDtraining1.001.000.980.97
LDvalidation0.960.880.930.84
  • a SE are between 0.00 and 0.01.