Table 1 Summary of associated genic SNPs, genes and gene-sets per phenotype
PhenotypesGenic SNPsa (% of Unique)bGenes (% of Unique)Gene-sets (% of Unique)
Age at menarche (AM)683 (75)155 (54)0 (NA)
Alzheimer’s disease (ALZ)123 (86)40 (50)0 (NA)
Anorexia nervosa (AN)0 (NA)1 (0)1 (100)
Autism spectrum disorder (ASD)0 (NA)0 (NA)0 (NA)
Body mass index (BMI)654 (65)171 (46)7 (71)
Bipolar disorder (BPD)40 (100)12 (83)0 (NA)
Birth length (BL)1 (0)6 (33)1 (100)
Birth weight (BW)20 (40)7 (43)1 (0)
Childhood obesity (CO)63 (0)9 (0)0 (NA)
Coronary heart disease (CHD)83 (88)24 (63)0 (NA)
Crohn’s disease (CD)773 (64)231 (48)11 (55)
Major depression disorder (MDD)0 (NA)0 (NA)1 (0)
Ever/never smoked (SMO)0 (NA)0 (NA)0 (NA)
Fasting glucose (FG)262 (61)75 (33)0 (NA)
HDL cholesterol (HDL)846 (67)225 (46)5 (60)
Human height (HH)10120 (95)2035 (88)19 (74)
Infant head circumference (IHC)0 (NA)0 (NA)2 (100)
LDL cholesterol (LDL)732 (68)187 (43)4 (50)
Rheumatoid arthritis (RA)153 (72)26 (50)8 (88)
Schizophrenia (SCZ)148 (78)32 (75)0 (NA)
Type 2 diabetes (T2D)106 (70)18 (33)1 (100)
Triglycerides (TG)614 (50)150 (22)8 (13)
Ulcerative colitis (UC)506 (63)251 (63)20 (70)
Years of education (EDU)9 (89)20 (30)0 (NA)
  • a Only SNPs, genes, or gene-sets with P-value significant after Bonferroni correction were counted. Average numbers of genic SNPs, genes, and gene-sets being tested are 583619, 23616, and 2653, respectively.

  • b Percent of unique is relative to 24 phenotypes. NA, not available.