Table 5 Estimates of variance components assuming HWE or not (NOIA) using a complete model with two-locus epistasis in LE scenario
Variance componentsHWEHWE correctedaNOIATrue
Additive12.04 (2.15)7.1015.43 (1.66)13.01
Dominant37.90 (4.12)24.2619.01 (1.99)18.49
Additive-by-additive1.34 (1.41)0.460.72 (0.79)1.27
Additive-by-dominant3.26 (1.72)1.792.59 (0.88)3.38
Dominant-by-dominant3.32 (1.92)2.590.63 (0.60)2.20
Residual1.37 (0.87)1.371.62 (1.03)0
Total59384038
  • Posterior SD values shown in parenthesis.

  • a Variance components were corrected as in Legarra (2016).