Table 6 Estimates of variance components assuming HWE or not (NOIA) using a complete model with two-locus epistasis in LD scenario
Variance componentsHWEHWE correctedaNOIAPseudotrueb
Additive9.92 (2.67)9.1610.25 (2.78)8.54
Dominant9.52 (3.19)8.358.47 (2.81)8.62
Additive-by-additive5.52 (3.68)4.688.89 (3.79)2.60
Additive-by-dominant4.71 (3.55)3.890.77 (0.73)6.35
Dominant-by-dominant3.78 (3.12)3.031.22 (1.09)3.02
Residual1.21 (1.21)1.211.45 (1.51)0
Total35293129
  • Posterior SD values shown in parenthesis.

  • a Variance components were corrected as in Legarra (2016).

  • b Variances if loci were in LE.