Table 1 The data used in the analysis
SpeciesData sourceNo. of isolates% GCReference genomeRC genesRC IGRsIC genesIC IGRsSC genesSC IGRs
E. coliNCBI complete genome15750.8MG1655430536473164234228732060
S. entericaPublic Health England36652.2Typhimurium_D23580455437773617283031142456
K. pneumoniaeHolt et al. (2015)20857.7NTUH_K2044478740063954315029542453
S. aureusReuter et al. (2015)13233.2HO_5096_0412240520842131170420571609
S. pneumoniaeChewapreecha et al. (2014)26439.5ATCC_70066921831846157411981373932
M. tuberculosisCasali et al. (2014)14465.6H37Rv406931353806294033322691
  • RC, relaxed-core; IC, intermediate-core; SC, strict-core.