Table 5 Significant SNPs associated with two traits in the A. thaliana population and one trait in the mouse population
PopulationTraitMethodSNPChr.Position (kb)P-valueaVariancebCandidate
 gene (kb)
A. thalianaBolt to flowerRANDOM-AMN4_14294341430.0110.437FRIGIDA
RANDOM-BMN4_14294341430.0050.517Chr. 4: 269–272
MN5_270760552,7080.0230.598
IMMASC0278352,5220.0410.874
MPWGAIMMN4_1429434143c0.527
MN5_193124851,931c 0.629
Growth rateFIXED-BGA1_323241,2430.0130.626FRIGIDA
RANDOM-BGA1_842941,2380.0100.299Chr. 4: 269–272
MPWGAIMGA1_842941,238c 0.253AT4G02990 (RUG2)
IMFRI_188842700.0050.493Chr. 4: 1322–1324
CIM-10GA1_776241,2390.0110.853AT4G02780 (GA1)
Chr. 4: 1238–1245
MousePMNFIXED-BM2.887287,5830.0400.471
RANDOM-BM2.887287,5830.0300.292
MPWGAIMM2.887287,583c 0.263
IMM2.887287,5830.0130.450
CIM-5M2.824280,6630.0280.496
  • a P-value was obtained from a permutation test.

  • b Denotes the variance of the effect of the detected marker combining the founder allele inheritance indicators.

  • c Owing to the high computational cost, no permutation analysis was conducted.