Table 1 Summary of restriction-associated DNA sequencing (RAD-seq) SNP markers used for the construction of genetic maps
Cross 3D1 × 3D7 (227 progeny)Cross 1A5 × 1E4 (214 progeny)
ChromosomeNo. of SNPsGenotyping rate (%)No. of SNPsGenotyping rate (%)
1469796.16462996.15
2248697.26229096.28
3229997.31223396.02
4161496.87144796.08
5163495.62177896.16
6139897.03134996.28
7137997.27140196.16
8157696.54153796.10
9144897.08130995.62
10101397.09111595.95
1192097.2698296.08
1292396.9077595.50
1380696.9572195.94
1411890.97
1546193.93
1619395.4910992.37
1739593.72
1811090.93
1946197.0641194.13
2032194.2527194.63
2123893.58
  • The average genotyping rate of the SNP markers is shown as an average per chromosome and cross. Chromosomes 1–13 are core chromosomes found in all strains of the species; chromosomes 14–21 are accessory.