Table 3 Summary of the number of incompatibilities, model selection, and AIC values
HeuristicNC|MD (mus × dom)NM|CD (cast × dom)ND|MC (shared)
Whole genome13125
Autosomes952
X only473
STEAC treeLinearSimple DM2+3 DMpapd DM
Whole genome24.5919.6421.6421.64
(1.E-2)(5.E-2)(5.E-2)(4.E-6)
Autosomes23.2219.0620.6220.62
(2.E-2)(7.E-3)(1.E-6)(6.E-7)
X only19.8418.4020.4020.24
(1.E-2)(5.E-3)(5.E-3)(1.E-6)
SD treeLinearSimple DM2+3 DMpapd DM
Whole genome23.7219.7121.7121.64
(1.E-2)(5.E-3)(5.E-3)(5.E-3)
Autosomes22.6418.8620.6220.62
(2.E-2)(2.E-2)(2.E-2)(2.E-2)
X only19.4818.5920.5920.24
(1.E-2)(1.E-2)(1.E-2)(2.E-2)
PhyloQTLNC|MD (mus × dom)NM|CD (cast × dom)ND|MC (shared)
Whole genome14109
Autosomes1184
X only325
STEAC treeLinearSimple DM2+3 DMpapd DM
Whole genome21.9323.7225.7222.82
(2.E-2)(4.E-2)(4.E-2)(3.E-6)
Autosomes23.0219.3021.3021.30
(2.E-2)(6.E-4)(6.E-4)(2.E-6)
X only17.6324.5926.5919.96
(1.E-2)(4.E-2)(4.E-2)(1.E-3)
SD treeLinearSimple DM2+3 DMpapd DM
Whole genome21.4724.9826.9822.82
(2.E-2)(2.E-2)(2.E-2)(3.E-2)
Autosomes22.3619.3721.3721.30
(2.E-2)(1.E-2)(1.E-2)(2.E-2)
X only17.9925.9027.9019.99
(5.E-3)(2.E-2)(2.E-2)(1.E-2)
  • AIC values are presented with standard deviations estimated from bootstrapped trees in parentheses. Models with lowest AIC values (favored) are in boldface type.