Tree partition | |||
---|---|---|---|

Incompatibility structure | D|MC | C|MD | M|CD |

I_{AB} | — | N_{C|MD} + N_{D|MC} | N_{M|CD} + N_{D|MC} |

I_{AC} | N_{M}_{|}_{CD} + N_{D}_{|}_{MC} | — | — |

I_{BC} | N_{C}_{|}_{MD} + N_{D}_{|}_{MC} | N_{M}_{|}_{CD} + N_{D}_{|}_{MC} | N_{C}_{|}_{MD} + N_{D}_{|}_{MC} |

I_{sharedC} | N_{D}_{|}_{MC} | — | — |

I_{sharedB} | — | — | N_{D}_{|}_{MC} |

I_{sharedA} | — | N_{D}_{|}_{MC} | — |

The number of incompatibilities is calculated based on the number of QTL partitioned to each phylogeny (

*N*with respective partition subscripted). Tree topologies are labeled on the top row with incompatibility structure as depicted in Figure 5 in the left column. Each entry is the total number of incompatibilities for its respective phylogenetic partition. Three measures of incompatibilities can be calculated from our data while three measures are missing for each topology.