Table 2 Top 10 variants ranked by PIPs from different methods and the corresponding P-values on the U.S. cohort
BIMBAMCAVIARBFPAINTOR
SNPP-valuePIPSNPP-valuePIPSNPP-valuePIP
rs131662141.32E-210.470rs131662141.32E-210.496rs131662141.32E-210.431
rs74479271.83E-210.354rs74479271.83E-210.383rs74479271.83E-210.305
rs74443133.21E-210.283rs74443133.21E-210.295rs74443133.21E-210.177
rs557921535.28E-200.226rs557921535.28E-200.232rs1134515318.29E-050.064
rs108755542.88E-130.204rs108755542.88E-130.163rs11317694.94E-140.047
rs284191912.44E-130.099rs284191912.44E-130.081rs1122692663.94E-050.038
rs11317694.94E-140.091rs11317694.94E-140.074rs73802723.59E-060.031
rs131534612.67E-190.072rs131534612.67E-190.068rs557921535.28E-200.019
rs97160692.36E-180.048rs97160692.36E-180.044rs108755542.88E-130.012
rs131815613.39E-180.035rs131815613.39E-180.031rs117449175.55E-010.011
  • The SNPs in boldface type are shared in the top 10 SNPs between two cohorts for each method.