Table 1 Average number of SNPs needed to include 50% and 90% causal SNPs among 100 simulated data sets under different numbers of causal SNPs for continuous traits
Methods1a2345
50%90%50%90%50%90%50%90%50%90%
CAVIARBF1.6910.002.9516.004.5319.805.4720.807.4226.18
BIMBAM1.639.753.0017.004.2519.805.5020.557.8626.25
PAINTOR2.0011.503.7520.335.3625.256.5025.678.7726.83
ENET2.0027.004.0026.207.8029.006.4129.008.3930.33
LASSONANANANANANA13.75NANANA
CAVIARBF(ref)1.7312.003.1715.004.7622.005.8823.177.8226.77
  • a The number of causal SNPs in the data. The smallest number for each column is in boldface type. NA: data not available for the calculation. CAVIARBF(ref): CAVIARBF with the correlation among SNPs estimated from the CEU population of the 1000 Genomes Project.