Table 7 Threading/fold recognition (Z scores) results of hits generated by SUNN, stromalin (SA), and some Drosophila chromosomal HEAT repeat proteins using MUSTER
PDB IDProteinSUNNSAPds5Nipped-BCapGCapD2
1wa5CExportin CSE1P8.3338.71110.25510.34310.313
3m1iCExportin-18.1168.83911.1747.7339.98011.181
1qgkAImportin-β7.99510.06010.9337.63711.10611.310
3ea5BImportin-β17.9699.98111.42211.08311.386
4fgvAExportin 17.91810.3507.4169.90110.350
2x1gFImportin-137.9149.27810.8389.90410.727
1u6gCCand1/TIP1208.91212.8157.94511.40612.807
3icqTExportin-T7.4808.494
2x19BImportin-137.3898.59610.14010.092
3a6pAExportin-57.386
3gjxAExportin-17.1569.648
1b3uAPP2A8.258
3nowAUNC458.221
3w3tAImportin-β312.6458.22212.21312.645
1qbkBKaryopherin-β27.759
4c0oATransportin 311.5858.29510.97711.596
1vw1ATcdA18.405
4acqAα-2-Macroglobulin7.984
4jspBmTOR7.580
  • Bold Z scores represent the top six PDB templates matched by the proteins tested. Above depicted proteins were derived from the following organisms: 1wa5C: Exportin CSE1P (Saccharomyces cerevisiae). 3m1iC: Exportin-1 (S. cerevisiae). 1qgkA: Importin-β (human). 3ea5B: Importin-β1 subunit (S. cerevisiae). 4fgvA: Exportin 1 (Chaetomium thermophilum). 2x1gF: Importin-13 (Drosophila melanogaster). 1u6gC: Cand1/TIP120 (human). 3icqT: Exportin-T (S. pombe). 2x19B: Importin-13 (human). 3a6pA: Exportin-5 (human). 3gjxA: exportin-1 (mouse). 1b3uA: PP2A (human). 3nowA: UNC45 (D. melanogaster). 3w3tA: importin subunit β3 (S. cerevisiae) (Kap121p). 1qbkB: karyopherin-β2 (human). 4c0oA: transportin 3 (human). 1vw1A: TcdA1 (Photorhabdus luminescens). 4acqA: α-2-macroglobulin (human). 4jspB: (human serine/threonine-protein kinase mTOR).