Table 2 RNA transcript levels for quelling, MSUD, and other genes in N. crassa cultures
Gene nameGene no.Vegetative transcript levels (RPKM)Sexual transcript levels (RPKM)
Quelling
 dcl-1ancu082704.32 ± 0.7331.96 ± 2.33
 dcl-2ncu0676617.92 ± 18.6143.13 ± 2.02
 qde-1ncu0753416.31 ± 2.0719.90 ± 4.55
 qde-2ncu04730155.31 ± 155.10247.54 ± 2.28
 qde-3ncu0859811.37 ± 1.976.24 ± 0.23
 qipancu0007625.01 ± 10.9599.55 ± 3.46
MSUD
 sad-1ncu021780.35 ± 0.2016.84 ± 2.82
 sad-2ncu042940.02 ± 0.0335.22 ± 2.13
 sad-3ncu092110.02 ± 0.0323.50 ± 3.82
 sad-4ncu015910.15 ± 0.059.79 ± 2.65
 sad-5ncu061470.00 ± 0.0013.08 ± 1.85
 sms-2ncu094340.04 ± 0.07567.76 ± 63.63
Rad54-like
 mus-25ncu023486.56 ± 0.4313.51 ± 3.54
 sad-6ncu0619010.93 ± 0.7122.61 ± 1.34
Housekeeping
 β-tubulinncu040541160.22 ± 70.15131.34 ± 17.73
 actinncu041732274.02 ± 256.81583.44 ± 56.30
  • RPKM, reads per kilobase of exon model per million mapped reads.

  • a dcl-1 and qip have roles in both MSUD and quelling (Catalanotto et al. 2004; Maiti et al. 2007; Alexander et al. 2008; Lee et al. 2010; Xiao et al. 2010).