| P. taeda (reclustered ESTs) | 45,085 | 98 | 98 | 26,700 | 712 | 60.8 |
| P. taeda (reclustered ESTs) | 45,085 | 98 | 95 | 29,676 | 1,845 | 69.91 |
| P. taeda (reclustered ESTs) | 45,085 | 95 | 95 | 31,324 | 2,074 | 74.01 |
| P. taeda (reclustered ESTs) | 45,085 | 95 | 50 | 29,744 | 5,486 | 78.14 |
| P. taeda (de novo) | 83,285 | 98 | 98 | 29,262 | 1,731 | 35.21 |
| P. taeda (de novo) | 83,285 | 98 | 95 | 42,822 | 5,130 | 57.58 |
| P. taeda (de novo) | 83,285 | 95 | 95 | 43,972 | 5,409 | 59.29 |
| P. taeda (de novo) | 83,285 | 95 | 50 | 44,469 | 28,116 | 87.15 |
| P. palustris (454) | 16,832 | 95 | 95 | 11,242 | 719 | 71.06 |
| P. palustris (454) | 16,832 | 95 | 50 | 11,181 | 1,949 | 78.06 |
| P. lambertiana (454 + RNASeq) | 40,619 | 95 | 95 | 13,134 | 317 | 33.11 |
| P. lambertiana (454 + RNASeq) | 40,619 | 95 | 50 | 23,376 | 3,792 | 66.88 |
| P. banksiana (TreeGenes clusters) | 13,040 | 95 | 95 | 9,703 | 513 | 78.34 |
| P. banksiana (TreeGenes clusters) | 13,040 | 95 | 50 | 9,470 | 1,473 | 83.92 |
| P. contorta (TreeGenes clusters) | 13,570 | 95 | 95 | 9,575 | 396 | 73.48 |
| P. contorta (TreeGenes clusters) | 13,570 | 95 | 50 | 9,534 | 1,083 | 78.24 |
| P. pinaster (TreeGenes clusters) | 15,648 | 95 | 95 | 9,738 | 943 | 68.26 |
| P. pinaster (TreeGenes clusters) | 15,648 | 95 | 50 | 10,221 | 2,491 | 81.24 |