Table 1 Summary statistics for candidate SNPs, reference SNPs, and 10-kb windows centered on each
Marker setnθW, totalθW, majorθW, minorFSTH12
Candidates for AMT
Top 1001000.0017 (0.610)a0.0018 (0.579)0.0011 (0.0041)0.3799 (0.006)0.0058 (0.032)
 Genic510.0016 (0.052)0.0016 (0.402)0.0010 (0.0006)0.4312 (<0.001)0.0126 (0.003)
 Intergenic410.0019 (0.550)0.0019 (0.653)0.0011 (0.2683)0.3414 (0.692)0.0039 (0.529)
Candidates for PWM
Top 1001000.0013 (< 0.001)0.0013 (< 0.001)0.0008 (< 0.001)0.4002 (0.044)0.0096 (<0.001)
 Genic410.0012 (<0.001)0.0013 (<0.001)0.0004 (<0.001)0.4207 (0.035)0.0201 (0.002)
 Intergenic590.0013 (0.003)0.0013 (0.007)0.0011 (<0.001)0.3401 (0.273)0.0063 (0.225)
Candidates for ITH
Top 1001000.0021 (0.005)0.0021 (<0.001)0.0020 (<0.001)0.3200 (0.159)0.0021 (<0.001)
 Genic300.0019 (0.531)0.0019 (0.526)0.0017 (0.551)0.3633 (0.628)0.0038 (<0.001)
 Intergenic570.0022 (<0.001)0.0021 (<0.001)0.0020 (<0.001)0.3205 (0.232)0.0022 (<0.001)
Reference sampleb10,0000.00180.00180.00160.32850.0047
0.0005, 0.00430.0005, 0.00450.0002, 0.00450.0851, 0.66130.0001, 0.0911
 Genic3,1710.00190.00190.00160.33210.0053
0.0005, 0.00430.0004, 0.00460.0002, 0.00450.0860, 0.69490.0001, 0.1140
 Intergenic6,1200.00180.00180.00150.32930.0048
0.0005, 0.00420.0005, 0.00440.0002, 0.00440.0851, 0.64330.0001, 0.0781
  • a Median (P-value for Wilcoxon signed-rank test of the hypothesis that the SNP set differs from the reference sample; P-values < 0.05 are in bold.

  • b First line, median value; second line, minimum and maximum for 95% of observations.