Table B2 Summary of outcomes from preprocessing stages for long fragment libraries, with lengths ranging from 1000 to 5500 bp
Estimated jump size (bp)Library countReads sequencedAfter error correction and mappingaNonjunction pairsRedundant readsFinal reads with both >63 bpEstimated clone coverage
1000–19995127.385.3 (67%)5.6 (7%)9.7 (12%)42.11.5×
2000–299916651.9430.0 (66%)26.6 (6%)43.0 (11%)207.411.9×
3000–399918705.4474.4 (67%)26.4 (6%)88.1 (20%)213.216.2×
4000–49996186.6127.8 (69%)6.6 (5%)13.6 (11%)63.86.3×
5000–5500355.338.2 (69%)5.7 (15%)19.8 (61%)57.62.1×
  • Read counts are given in millions.

  • a Reads that successfully passed error correction and mapped to the haplotype of the target megagametophyte.