Table 3 ANOVA results for the main effects of exon-type and time-point and the interaction term to test for differential expression of constitutive and/or alternative exons over the time course from 2009 multi-transcript genes [model (2)]
Main effects [model (2)]Interaction (exon type × time point)
FDR levelExon typeTime pointModel (2)Model (3)a
  • Model (3) was fit with the constitutive exons as a covariate for 1094 genes with constitutive exon(s) and at least two alternative exons (interaction term of interest shown).

  • a Significance thresholds are based on type III SS. All model terms for (3) are given in Table S9.