Table 4  Tests of recurrent positive selection
GeneGene NamePAMLaMcDonald–Kreitmanb
FBgn0030630cNAP = 0.0005
FBgn0030631cNoP = 0.31
FBgn0000028cdacj6NAP = 0.47
FBgn0030672deNoP = 0.326
FBgn0030673eYesP = 0.15
FBgn0030674eYesP = 0.00001
FBgn0030675eYesP = 0.42
FBgn0030676eYesP = 0.35
FBgn0011741eactr13EYesP = 1
FBgn0033391eYesP = 0.02
FBgn0026666el(1)G0136NoP = 1
FBgn0030678dNoP = 0.087
FBgn0030680cNoP = 0.01
FBgn0030628cNoP = 0.83
FBgn0026428cHDAC6NAP = 0.68
  • a The PAML results are from Larracuente et al. (2008). “NA” indicates that this gene was not included in the initial PAML analysis, “Yes” indicates that PAML results are consistent with positive selection for this gene (in at least the D. melanogaster lineage), which could result from statistically significant site models, branch models (for branches including the melanogaster lineage) and/or branch-site models (for branches including the melanogaster lineage). “No” indicates that although this gene was included in the PAML analysis, no statistically significant signal consistent with positive selection was found.

  • b Statistical significance was calculated using Fisher’s exact test. Bold denotes significance at P < 0.05.

  • c Contained within window of reduced π (region coordinates: 15,226,236-15,301,236).

  • d Contained within window identified by single hitchhiking model.

  • e Contained within window of reduced π (region coordinates: 15,596,236-15,636,236).