Table 2  Summary of the SNPs detected by the different approaches
BayeScanAnnotation
SNPClinality: R2MC sampling: no. SNPs affecting the SNPAffected byLog10(P.O.)FSTBayenv BFAA changeNucleotide
PaPHYN_RIII1850.256257−0.3600.0430.710
PaPHYN_RIII880.510012−0.4270.0514.276
PaPHYO_RIII5100.213335−0.3530.0541.938
PaPHYP_RIII2740.4040142.7430.139**25.175**
PaPHYP_RIII760.408110−0.4090.0451.879
PaMFTL1_10500.3162392.4670.129**5.489*
PaMFTL1_20910.3833112.0130.127**11.692**
PaMFTL1_21360.1260.0725.813*
PaMFTL1_22150.285319−0.4920.0481.263
PaMFTL1_34410.3591871.7880.122**12.817**
PaMFTL1_36580.5550120.3330.0806.414*
PaMFTL1_8021.4690.127*6.540*
PaFTL2pr_15600.41969−0.4170.0500.617
PaFTL2pr_18240.493015−0.3470.0533.300
PaFTL2pr_19510.6410141.5400.121**18.346**
PaFTL2pr_21730.4596130.8500.101*5.254 *
PaFTL2pr_25090.4412131.9150.133**16.667**
PaFTL2pr_26940.3877131.1590.108*5.752*
PaFTL2pr_27900.39611121.2840.112*4.963*
PaGI_F2_9_14700.543070.5960.0902.752His to TyrCAT to TAT
PaGI_F2_9_9870.4791810000.170**117.407**His to TyrCAT to TAT
PaGI_F6_8_11110.24416−0.0610.0360.627
PaHB3_3850.34908−0.1160.0360.582
PaKN2a_2530.240336−0.4110.0430.557
PaKN2b_11570.7020.020*0.592
PaKN3a_2110.377012−0.5210.0450.873
PaKN4b_2420.2513380.4150.08847.522**
PaCCA1_13020.288227−0.3810.0430.533
PaPRR1_1992−0.5290.0474.884*
PaPRR1_2990−0.5030.0484.871*
PaPRR1_3301−0.5110.0484.721*
PaPRR3_F1_25700.38007−0.3190.0553.244
PaPRR3_F1_29781.7220.123**2.568
PaPRR3_F2_3310.309258−0.5040.0484.213
PaPRR3_F2_4810.35418−0.3690.0553.009
PaPRR7_F1_15050.455011−0.2370.0602.965
PaPRR7_F1_7710.6832112.4670.126**3.842
PaPRR7_F2_4170.230337−0.3740.0531.768
PaPRR7_F2_5340.67321110000.138**4.458Ser to ThrTCT to ACT
PaPRR7_F3_1040.68921110000.161**9.906*
PaZTL_7930.35277−0.3430.0410.677
  • See the main text for details on the different approaches. *P < 0.05; **P < 0.01. Log10(P.O.) (P.O., posterior odds): 0.5–1, substantial evidence; 1–1.5, strong evidence; 1.5–2, very strong; >2, decisive evidence. Bayes factors: 3.2–10, substantial evidence; 10–100, strong evidence; >100, decisive evidence.