TABLE 3

QTL detected for DGY, GM, and SD in F3 and LHRF-F3 populations

ChrConventional F3LHRF-F3
Left markerPos (cM)CI (cM)LODR2AddLeft markerPos (IcM)CI (IcM)LODR2Add
DGY (ton ha−1)
1bnlg10837056–846.534.44−1.411Umc1397226218–2404.233.51−0.927
1umc161254242–2725.122.771.250Umc161728716–7545.45.111.021
2gsy53b8840–1683.432.250.882
2Bnlg2248208190–2203.812.73−0.900
2csu143112108–12216.059.52−2.327
2phi1274624484766.698.43−1.291
2umc137184156–2045.142.73−1.381
4Umc15112001742266.086.04−1.232
4umc1101212186–2304.165.88−1.131csu9b476448–5064.463.20−1.145
4Umc1532550538–5643.892.98−0.868
5Umc83b314296–3243.433.59−0.888
6Bnlg2491261081386.599.10−1.200
7umc1166852–1065.242.721.332
8umc1526250–784.743.381.347
8umc8910076–1203.022.941.105
9csu147204190–2363.762.60−0.939
10umc1196128118–1347.045.911.382
Embedded Image48.4/59.7541.5/56.85
GM (%)
2umc134l10294–1126.334.050.374
2umc5a126114–1443.22.55−0.244
2umc137172160–1867.074.30−0.289
3umc1892220–722.932.000.21bnl13.05b1761661883.673.22−0.252
3umc1767158148–1804.593.42−0.238
4gsy46862–7619.6618.02−0.51Mmc04711541421885.988.94−0.308
5umc21157658–1002.721.6−0.171
5bnl7.713303143503.544.29−0.228
6bnlg1702130118–1444.592.92−0.213
8Bnlg10313703303923.772.69−0.254
9phi0275646–666.625.23−0.280
9bnl5.093783703863.664.67−0.230
Embedded Image45.5/55.4920.6/24.82
SD (days)
1umc11664828–626.495.580.391
1umc84282268–2926.454.760.366Bnlg21238148008363.335.180.287
3umc1892226–463.712.820.328
3dupssr232702402863.363.430.307
5mmc02619082–1104.373.430.314Umc432502402608.259.630.559
5Umc11103243123404.795.05−0.385
6gsy189208–363.192.67−0.243
6umc62178156–1962.842.42−0.246
8umc1526440–863.512.880.324
8umc899690–10410.957.300.56
8umc1384180136–1904.533.59−0.300
9phi0275648–646.476.28−0.376
9umc1137200180–2083.552.600.261Umc11374724564924.725.070.376
10umc4410286–1365.273.880.315
Embedded Image45.7/54.4026/30.23
  • For each detected QTL are indicated the chromosome (Chr), the left marker flanking the QTL (left marker), the estimated position (Pos) on the linkage map of the population, the 95% confidence interval of the QTL position (CI), the LOD score, the percentage of phenotypic variance explained by the QTL (R2), and the additive effect (associated with F252 allele). Embedded Image is the proportion of phenotypic variance/genotypic variance explained by all the detected QTL for a given trait. QTL showing significant digenic epistasis (P < 0.01) are underlined. QTL involved in epistatic interaction with two different QTL are double underlined.