Imputation error rates of 47 inbred strains genotyped only in WTCHG SNPs, using Mouse HapMap SNPs, and gap-filling Perlegen SNPs
| Genotype confidence | ||||
|---|---|---|---|---|
| SNP quality | High confidence (%) | Medium confidence (%) | Low confidence (%) | Total (%) |
| 36 classical inbred strains | 0.35 (88.9) | 9.63 (6.74) | 29.7 (4.37) | 2.25 (100) |
| All 47 strains | 0.37 (71.7) | 8.85 (16.7) | 27.0 (11.5) | 4.86 (100) |
The percentage of imputed genotypes in each category is shown within parentheses.