Leave-one-out imputation error rates of 12 resequenced classical inbred strains using Mouse HapMap SNPs, WTCHG SNPs, and gap-filling Perlegen SNPs
| Genotype confidence | ||||
|---|---|---|---|---|
| SNP quality | High confidence (%) | Medium confidence (%) | Low confidence (%) | Total (%) |
| Fully resequenced | 0.27 (46.1) | 6.40 (2.79) | 19.0 (2.73) | 1.59 (51.7) |
| Mostly resequenced | 0.40 (25.3) | 3.94 (3.50) | 16.1 (2.98) | 2.26 (31.8) |
| Poorly resequenced | 0.76 (9.59) | 4.05 (2.62) | 15.8 (4.29) | 5.18 (16.5) |
| Total | 0.37 (81.1) | 4.74 (8.91) | 16.8 (10.0) | 2.40 (100) |
The percentage of imputed genotypes in each category is shown within parentheses.