Strains used in Mouse HapMap projects and their availability in other resources
| Strain name | Perlegen resequenced | WTCHG genotyped | Additional gap-filling | Wild-derived or classical inbred |
|---|---|---|---|---|
| 129P2/OlaHsD | X | X | X | IN |
| 129S1/SvImJ | O | O | X | IN |
| 129S2/SvHsd | X | X | X | IN |
| 129S4/SvJae | X | X | X | IN |
| 129S6/SvEv | X | O | X | IN |
| 129T2/SvEms | X | X | O | IN |
| 129X1/SvJ | X | O | O | IN |
| A/J | O | O | X | IN |
| AKR/J | O | O | X | IN |
| B6A6ESlineRegeneron | X | X | X | IN |
| BALB/cByJ | O | O | X | IN |
| BALB/cJ | X | O | X | IN |
| BPH/2J | X | O | O | IN |
| BPL/1J | X | O | O | IN |
| BPN/3J | X | O | O | IN |
| BTBRT<+>tf/J | O | O | X | IN |
| BUB/BnJ | X | O | O | IN |
| C2T1ESlineNagy | X | X | X | IN |
| C3H/HeJ | O | O | X | IN |
| C3HeB/FeJ | X | O | X | IN |
| C57BL/10J | X | O | X | IN |
| C57BL/6ByJ | X | X | X | IN |
| C57BL/6J | O* | O | X | IN |
| C57BL/6JBomTac | X | X | X | IN |
| C57BL/6JCrl | X | X | X | IN |
| C57BL/6JOlaHsd | X | X | X | IN |
| C57BL/6NCrl | X | X | X | IN |
| C57BL/6NHsd | X | X | X | IN |
| C57BL/6NJ | X | X | X | IN |
| C57BL/6NNIH | X | X | X | IN |
| C57BL/6NTac | X | X | X | IN |
| C57BLKS/J | X | X | O | IN |
| C57BR/cdJ | X | O | O | IN |
| C57L/J | X | O | O | IN |
| C58/J | X | O | O | IN |
| CALB/RkJ | X | O | X | WI |
| CAST/EiJ | O | O | X | WI |
| CBA/J | X | O | O | IN |
| CE/J | X | O | O | IN |
| CZECHII/EiJ | X | X | O | WI |
| DBA/1J | X | O | O | IN |
| DBA/2J | O | O | X | IN |
| DDK/Pas | X | X | X | IN |
| DDY/JclSidSeyFrkJ | X | O | O | IN |
| EL/SuzSeyFrkJ | X | O | X | IN |
| FVB/NJ | O | O | X | IN |
| Fline | X | X | X | IN |
| HTG/GoSfSnJ | X | X | X | IN |
| I/LnJ | X | O | O | IN |
| ILS | X | O | X | IN |
| IS/CamRkJ | X | O | X | WI |
| ISS | X | O | X | IN |
| JF1/Ms | X | X | O | WI |
| KK/HlJ | O | O | X | IN |
| LEWES/EiJ | X | O | X | WI |
| LG/J | X | O | O | IN |
| LP/J | X | O | O | IN |
| Lline | X | X | X | IN |
| MA/MyJ | X | O | O | IN |
| MAI/Pas | X | X | X | WI |
| MOLF/EiJ | O | O | X | WI |
| MOLG/DnJ | X | X | O | WI |
| MRL/MpJ | X | O | O | IN |
| MSM/Ms | X | O | O | WI |
| NOD/LtJ | O | O | X | IN |
| NON/LtJ | X | O | O | IN |
| NOR/LtJ | X | O | X | IN |
| NZB/B1NJ | X | X | O | IN |
| NZL/LtJ | X | X | O | IN |
| NZO/HlLtJ | X | O | O | IN |
| NZW/LacJ | O | O | X | IN |
| O20 | X | X | X | IN |
| P/J | X | O | X | IN |
| PERA/EiJ | X | O | O | WI |
| PERC/EiJ | X | O | O | WI |
| PL/J | X | O | O | IN |
| PWD/PhJ | O | X | X | WI |
| PWK/PhJ | X | O | O | WI |
| Qsi5 | X | X | X | IN |
| RBA/DnJ | X | O | O | HY |
| RF/J | X | O | X | IN |
| RIIIS/J | X | O | O | IN |
| SEA/GnJ | X | O | O | IN |
| SEG/Pas | X | X | X | WI |
| SJL/J | X | O | O | IN |
| SKIVE/EiJ | X | O | X | WI |
| SM/J | X | O | O | IN |
| SOD1/EiJ | X | X | O | HY |
| SPRET/EiJ | X | O | O | WI |
| ST/bJ | X | O | X | IN |
| SWR/J | X | O | O | IN |
| TALLYHO/JngJ | X | X | O | IN |
| WSB/EiJ | O | O | X | WI |
| ZALENDE/EiJ | X | O | X | WI |
C57BL/6J is not included in the 15 resequenced strain, but it is the reference strain that has been fully sequenced. O, included; X, excluded. HY, hybrid strain; IN, inbred strain; WI, wild-derived strain.