TABLE 2

Peak LOD score positions, positions representing endpoints of 2-LOD support interval, proportion of phenotypic variation explained (r2), and allelic effects of QTL detected with combined connected population analysis model

Short-day QTL
QTL 2-LOD support interval and peakPhenotypic r2Additive effect
TraitChrPeak − 2 LODLOD PeakPeak + 2 LODB73B97CML254Ki14
GDDTA12622782870.077.6a−5.7b−1.4bc−0.5c
GDDTA4511210.040.8a1.7a−5.4b2.9a
GDDTA546521330.05−2.5a−0.5a5.8b−2.9a
GDDTA86566760.08−3.5a−0.9a7.7b−3.4a
GDDTA9991031470.064.3a−7.2b−0.5c3.3ac
GDDTS11791932450.050.0ab−5.6a2.9b2.8b
GDDTS12963003130.057.4a−2.6b−2.4b−2.4b
GDDTS54854600.06−3.3a−0.2a7.8b−4.3a
GDDTS62535430.05−1.1ab−4.7a1.1ab4.6b
GDDTS86574980.08−4.5a3.1b8.3b−6.9a
GDDTS9991031100.086.6a−7.8b−1.1c2.4ac
GDDTS101241361790.051.5ab−4.3a−2.5a5.4b
GDDASI14959890.060.1ab2.7b−2.0a−0.8a
GDDASI21041081250.08−0.8ab−2.6b0.6ac2.8c
GDDASI372931020.06−0.7a3.2b−2.3a−0.3a
GDDASI43746620.080.7ab2.8b−1.1ac−2.5c
GDDASI6861071340.03−0.8a−0.8a−0.8a2.4b
GDDASI86167930.13−1.0a5.1b−1.7a−2.4a
GDDASI1089971720.040.5a0.3a−3.2b2.5a
PH12272362420.051.8a−1.4b−1.0bc0.6ac
PH389961130.080.7a−2.3b0.2a1.4a
PH84655610.151.1a−3.6b2.0a0.5a
PH101421581680.050.2ab1.5a−1.4b−0.3b
EH12562762930.071.6a−1.5b−0.9b0.7a
EH13243313400.051.4a0.2ab−1.0b−0.6b
EH395981020.090.6a−2.0b0.6a0.8a
EH51531571640.05−0.2a−0.9a1.5b−0.3a
EH63040440.07−2.0a0.5bc1.6b−0.1c
EH66169760.051.8a−0.3b−0.1b−1.3b
EH75559630.08−0.5ab1.4c0.8ac−1.6b
EH85659640.100.8ab−2.4c2.1a−0.4b
EH81171231280.07−0.9a−1.2a1.5b0.5ab
EH104860660.06−0.5ab1.0ac−1.8b1.4c
TLN11151341530.05−0.1a−0.1a0.0ab0.2b
TLN11842002800.050.1a−0.2b0.0a0.1a
TLN280871250.100.2a0.1a−0.2b0.0a
TLN584881350.05−0.2a0.0ab0.1b0.0b
TLN51551561580.110.0a−0.2b0.2c0.1ac
TLN74860800.070.0ab0.2a−0.0b−0.2b
TLN81241301330.08−0.1ab−0.2a0.2c0.0b
TLN101191221260.07−0.2a0.0b0.2c−0.1ab
Long-day QTL
GDDTA11311331390.12−8.4a−5.1ab11.3c2.2b
GDDTA21801841870.09−6.6a−4.2ab10.9c−0.2bc
GDDTA31631811810.07−8.0a−2.2ab6.0c4.2bc
GDDTA87074760.15−7.4a−6.2a15.6b−1.9a
GDDTA91061151200.09−8.8a−2.8ab10.4c1.2b
GDDTA105960690.25−6.6a−14.2a9.9b11.0b
GDDTA101581741910.052.4a−11.5b6.4a2.7a
GDDTS11381441460.08−11.2a−2.4b9.5c4.1bc
GDDTS12002142390.06−3.7ab−8.2a10.2c1.7c
GDDTS21801831850.09−9.0a−4.4a13.5b0.0a
GDDTS31591711810.05−6.0ab−5.7a3.0bc8.7c
GDDTS869751270.08−10.4a−0.4a14.8b−4.0a
GDDTS91031071240.07−10.1a−2.3ab10.1c2.3bc
GDDTS105960630.28−11.9a−16.8a9.7b19.1b
GDDTS101351661900.055.5a−13.4b1.2a6.7a
GDDASI11441621810.05−5.4a0.4b1.8b3.2b
GDDASI22841470.05−2.4a−2.3a−0.1a4.8b
GDDASI27892990.062.2a−5.6b2.2a1.3a
GDDASI41551581650.050.4ab3.3a0.8a−4.5b
GDDASI61061151350.04−1.5a−2.3a0.3ab3.5b
GDDASI88690990.09−3.4a7.1b−0.2a−3.5a
GDDASI105860630.18−4.3a−3.8a−1.1a9.2b
PH12242292360.093.7a−5.2b−1.4c2.9a
PH26531600.04−2.3a3.3b0.2a−1.3a
PH3971051140.09−0.8ab−3.0a1.3bc2.5c
PH5911001050.061.7a1.6a−0.5ab−2.8b
PH86166810.103.4a−6.3b1.7a1.2a
PH81181231260.06−2.9a−1.4ab3.0c1.3bc
PH104853830.05−0.1ab−2.0a−0.8a3.0b
EH12542762920.062.1a−1.8b−1.4b1.1a
EH21511551640.060.2a0.3a−2.6b2.1a
EH3941001200.080.2a−2.4b0.9a1.3a
EH41831800.041.5a0.4ab−1.7b−0.3ab
EH75779910.05−0.9ab1.6c0.8ac−1.6b
EH86570730.160.9a−5.0b1.9a2.2a
EH81181231260.06−1.3a−1.3a3.1b−0.5a
EH91141181340.05−2.2a0.5bc−0.3ab1.9c
EH105178840.07−0.4a−1.5a−0.5a2.3b
TLN11231441500.08−0.0ab−0.2a0.0b0.2b
TLN2921031080.120.1ab0.2a−0.3c−0.1bc
TLN31141171220.08−0.0a−0.2a0.3b−0.1a
TLN51551561710.07−0.1ab−0.2a0.2c0.1bc
TLN605370.04−0.1a−0.1a0.2b0.0a
TLN74654630.070.0ab0.2a−0.1b−0.2b
TLN86769700.22−0.1a−0.4b0.3c0.2c
TLN91271281350.09−0.2a−0.1ab0.2c0.1bc
TLN107273820.16−0.3a−0.2a0.3b0.1b
Photoperiodic QTL
GDDTA11191281410.10−5.2a−4.3a7.0b2.4b
GDDTA21791821850.07−4.5a−2.6a7.7b−0.6a
GDDTA31091161810.05−0.8ab−5.4a5.3b0.9b
GDDTA41421501530.06−2.2a−1.8a8.8b−4.9a
GDDTA87073750.12−4.4ab−5.8a9.1c1.1b
GDDTA91141181200.12−10.9a3.5bc8.5b−1.1c
GDDTA106060620.39−6.0a−16.2b13.7c8.6c
GDDTS11191281450.09−7.8a−4.8a8.6b4.1b
GDDTS21801831850.09−7.2a−3.3a12.4b−1.9a
GDDTS37794980.07−0.3a−9.1b3.8a5.5a
GDDTS87073760.07−6.4a−4.9a8.1b3.3b
GDDTS98387900.11−14.3a3.7bc10.7b−0.1c
GDDTS106060610.40−10.7a−20.5b16.3c14.9c
GDDASI380961270.051.3a−4.4b−0.1ab3.2a
GDDASI105960630.16−3.7a−4.7a1.6b6.8c
PH241621000.05−0.6ab2.1c0.6ac−2.0b
PH3971041340.04−0.9a−1.3a0.4ab1.8b
PH427721120.041.2a1.3a−0.9ab−1.6b
PH866701060.100.2a−3.4b1.9a1.4a
PH95765830.06−3.1a2.6b1.6b−1.1a
PH107678840.100.3ab−3.1c0.1a2.7b
EH86970780.13−0.1a−2.6b1.5a1.2a
EH98794990.08−2.6a1.1b0.5b1.0b
EH107778830.110.4a−2.3b0.7a1.3a
TLN11171441650.040.0ab−0.1a0.1b0.0a
TLN2951071300.050.0ab0.1a0.0ab−0.1b
TLN349721440.04−0.1a−0.1a0.1b0.1ab
TLN590941050.040.1a0.3a−0.2b0.0a
TLN86870720.17−0.1a−0.2b0.1ac0.2c
TLN98789950.16−0.3a0.1b0.1b0.1b
TLN107982850.22−0.1a−0.3b0.2c0.2c
  • Allelic effects are in GDD for flowering time traits, cm for height traits, and number of leaves for TLN. Allelic effects at a QTL followed by the same letter are not significantly different at P = 0.05.