TABLE 3

Imputation accuracy—real data

Map segmentMissing markersError rate
No. of markersFPMLHCM
Sparse256 12 SNPs/Mb3 (1.2%)0.0230.021
25 (9.8%)0.0250.022
125 (48.8%)0.0460.031
Dense500 84 SNPs/Mb5 (1.0%)0.0060.007
50 (10.0%)0.0070.007
250 (50.0%)0.0150.010