TABLE 3

Comparative analysis of turbot LG5 markers against model fish genomes

TruDreTniOlaGac
SmaUSC-270
SmaUSC-E30LG8
SmaUSC-65
SmaUSC-254
SmaUSC-247
SmaUSC-10
SmaUSC-225SC-332UnknownLG8
SmaUSC-88SC-25LG1LG8
SmaUSC-278
SmaUSC-198
SmaUSC-12SC-250LG8LG1LG4LG8
SmaUSC-202LG8
SmaUSC-265SC-25LG1LG4LG8
  • BLAST matches were against the T. nigroviridis (Tni), T. rubripes (Tru), G. aculeatus (Gac), O. latipes (Ola) and D. rerio (Dre) genomes using a significance threshold of E < 10−5 (Stemshorn et al. 2005); most of them were retained at E < 10−10 (in boldface type). “Unknown” refers to genome sequences that have not been mapped in Tni. SC, scaffold.