TABLE 4

Molecular diversity of genomic regions around Pi-ta in O. sativa (indica, japonica, and weedy rice) and O. rufipogon

Nucleotide polymorphism (π)Tajima's D
Physical location (Mb)9.69.810.2Pi-taa10.811.211.89.69.810.2Pi-taa10.811.211.8
O. sativa0.001780.001150.001080.00180.001500.003910.669380.699580.825950.171490.92414NA0.91739
O. indica0.00190.001090.002040.002180.0021300.00479−0.96803−1.51481−0.10605−0.708261.08052NA1.02022
O. japonica0.001180.001480.000470.002530.0004800.004160.973270.275010.440031.052350.6426NA0.13462
Weedy rice0.0010.001290.00040.001660.0016800.00365−0.93379−0.45271−0.51132−0.44628−0.42536NA1.13812
O. rufipogon0.005080.00150.00570.004770.003010.00150.00388−0.158720.239980.16801−2.572750.22133−1.36029−0.3066
  • a The sequence of Pi-ta including flanking region (2 kb upstream and downstream of Pi-ta) and coding region with intron was used for nucleotide polymorphism and Tajima's D.