TABLE 3

Number of segregating sites, genetic diversity, and number of length variants in eight nuclear loci in D. magna and seven nuclear loci in D. pulex

Sequence length (nt)Diversity (π)N length variantse
SpeciesLocusNHapaCodingNoncodingSbπsπncπsiπaπall
D. magnaEif2γ18429186140.02100.00910.01300.00130.00670
D. magnaEno18438193120.00920.01000.00980.00160.00530
D. magnaGapdh183697090.01640.02200.01900.00000.00680
D. magnaGot181188348190.00080.01300.00720.00080.00345
D. magnaLdh1899949390.00040.00220.00160.00040.00108
D. magnaMpi18645319140.00080.00590.00430.00110.00263
D. magnaPgi181611957112c0.02800.01600.01900.00240.011013
D. magnaUsp18333141140.04400.01200.02200.00000.01002
D. pulexEif2γ1212330150.0130NANA00.00310
D. pulexEno149330140.0180NANA0.00020.00430
D. pulexGapdh14762080.0120NANA00.00300
D. pulexGot128520140.0170NANA00.00390
D. pulexLdh126720180.0260NANA0.00320.00870
D. pulexMpi12759060.0062NANA0.00100.00220
D. pulexPgi121365078d0.0620NANA0.00240.01640
D magnaAverage24.30.01500.01100.01200.00090.0059
D. pulexAverage21.90.0220NANA0.00090.0059
  • s, synonymous; nc, noncoding; si, silent (synonymous and noncoding combined); a, nonsynonymous, NA, not assessed.

  • a Number of haplotypes.

  • b Number of segregating sites.

  • c Includes four triallelic sites.

  • d Includes one triallelic site.

  • e All length variants are in introns.