TABLE 1

Physical and genetic mapping of TelContigs

TCNo. of readsLinked to assembly contigaTERMINUS linkagebPlasmid clone(s)cCosmid clone(s)cRFLP mappingMap position inferreddGap size (kb)eM clonef
127.2477.247, 7.246CW-TT010IVR0
23CW-TT012IR?pCW-TM001
33YSK-A3VIR?
427.1417.141VIIR?pCW-TM003
597.74JM-TT004OR708IIIL?MV789
687.77CW-TT09OR711IIR0MV752
7191.7187.17YSK-B8OR713IIIR1.92MV762
8217.797.79YSK-A10OR712IVL0MV763
9127.81OR078OR709IIL1.48MV756
10271.3317.37OR703VR2.13
11257.347.34YSK-A9OR706VIL0MV791
12277.937.93YSK-A2OR726IL0pMV-Tel-IL
13477.2517.251JM-TT001OR710VIIL−0.43gMV750
1457.1627.162CW-TT004VL?
  • a Shows TCs that were already incorporated into at least one of the genome assemblies. The number before the period indicates the assembly version. A dash indicates that the TC was not represented in any assembly.

  • b A dash indicates that the TERMINUS was not able to identify a link to the assembly.

  • c Listed are the IDs of individual clones that represent each TC. A dash indicates that a corresponding clone was not identified.

  • d Map position was inferred on the basis of the physical location of the contig inferred from the genome database (http://www.broad.mit.edu/annotation/genome/neurospora/maps/Index.html).

  • e A zero indicates that the TelContig was already incorporated into the assembly. A question mark denotes remaining gaps.

  • f Clones starting with “p” are plasmids; the remainder are cosmids.

  • g Contigs 7.251 and 7.78 actually overlap.