TABLE 9

Estimating θ and ρ in the absence of a reference genome

Xlkθ0 = 100ρ0 = 20ρ0 = 40ρ0 = 60
3020100.5 (16.7)21.3 (7.5)42.2 (11.4)63.2 (15.7)
5040100.3 (16.3)21.5 (7.7)42.2 (13.0)61.8 (15.1)
0.5×302099.3 (18.0)22.2 (11.1)44.2 (16.1)62.8 (19.2)
0.5×5040101.2 (18.2)32.8 (34.9)47.7 (34.3)61.5 (30.9)
  • We report the mean (and RMSE) of the estimates over 1000 simulations.