TABLE 4

Estimating ρ for resequencing data where θ = 100 and NT = number of reads required to use homozygous genotype calls in the inference

XNTρ0 = 20ρ0 = 40ρ0 = 60
16×321.6 (7.4)42.2 (12.1)63.9 (16.3)
521.9 (7.6)43.3 (12.9)64.2 (16.7)
721.9 (7.6)42.3 (12.5)64.2 (16.7)
321.6 (7.6)42.2 (12.1)63.9 (16.6)
521.6 (7.3)43.3 (12.9)63.2 (15.9)
721.9 (7.5)42.3 (12.5)62.7 (16.3)
321.4 (7.6)42.7 (12.9)62.1 (15.8)
521.2 (7.3)40.9 (11.4)61.5 (15.5)
719.8 (6.3)37.6 (10.8)54.6 (14.6)
319.8 (6.6)38.0 (11.1)55.9 (14.3)
513.4 (7.7)22.7 (18.5)30.4 (30.5)
7NANANA
  • We report mean (and RMSE) of the estimates over 1000 simulations. NA, not applicable due to too few two-locus pairs meeting the read criteria.