TABLE 1

The number of genes with significant cis and trans eQTL in three data sets at different numbers of expected false positives

E (false positives)
Data setTypeMethod100101
Yeastcist-test646506398
SVA817617490
ICE1118935757
transt-test18451067738
SVA612293167
ICE539363263
BXD whole braincist-test714332
SVA1487942
ICE19312069
transt-test2016122
SVA82115
ICE1312111
BXD HSCcist-test401910
SVA281412
ICE502313
transt-test9481
SVA102111
ICE10391
  • A total of 5534 genes are tested in the yeast data set, and 8596 genes are tested in the two BXD mouse data sets.