TABLE 6

Simulation results when 10% of the loci are subjected to selection

True:Balancing selectionNeutralDirectional selection
Classified:Bal.Neut.Direc.Bal.Neut.Direc.Bal.Neut.Direc.
AFPLs 10%18 (31)32 (19)0 (0)11 (49)861 (802)28 (49)0 (0)17 (15)33 (35)
AFLPs 20%37 (60)63 (40)0 (0)20 (61)758 (702)22 (37)0 (0)29 (28)71 (72)
SNPs 10%28 (38)22 (12)0 (0)26 (48)856 (911)18 (41)0 (0)19 (11)31 (39)
SNPs 20%58 (73)42 (26)0 (1)34 (44)751 (714)15 (42)0 (0)39 (29)61 (71)
SSRs 10%50 (50)0 (0)0 (0)22 (5)866 (891)12 (4)0 (0)0 (0)50 (50)
SSRs 20%100 (98)0 (2)0 (0)20 (7)764 (788)16 (5)0 (0)0 (0)100 (100)
  • Numbers of AFLP, SNP, and microsatellite loci simulated under (“true”) balancing selection, neutrality, and directional selection that were classified in each category using reversible-jump cutoff values given in Tables 35 are shown. The results for the simulations with 20% of selected loci in the genome are also shown. Bal., balancing selection; Neut., neutrality; Direc., directional selection.