Model Q^{a} | Model Q + K^{b} | Model Q + IDP^{c} | |||||||
---|---|---|---|---|---|---|---|---|---|

Locus | SNP | P_{average}^{d} | P^{e} | P_{adj}^{f} | (%)^{g} | P^{e} | (%)^{g} | P_{idp}^{h} | P_{snp}^{i} |

b188 | B17 | 0.012 | 0.016 | 0.103 | 0.88 | 0.019 | 0.48 | 0.378 | 0.230 |

B173 | 0.002 | 0.001 | 0.001 | 1.55 | 0.003 | 0.70 | 0.608 | 0.056 | |

B263 | 0.012 | 0.016 | 0.117 | 0.88 | 0.019 | 0.48 | 0.378 | 0.230 | |

B272 | 0.011 | 0.014 | 0.079 | 0.92 | 0.017 | 0.50 | 0.378 | 0.230 | |

B291 | 0.011 | 0.014 | 0.066 | 0.92 | 0.017 | 0.50 | 0.378 | 0.230 | |

B316 | 0.002 | 0.001 | 0.002 | 1.60 | 0.003 | 0.80 | 0.608 | 0.056 | |

B472 | 0.065 | 0.023 | 0.188 | 0.79 | 0.020 | 0.52 | 0.220 | 0.268 | |

d801 | D14 | 0.025 | 0.031 | 0.340 | 0.74 | 0.046 | 0.32 | 0.607 | 0.218 |

D50 | 0.021 | 0.028 | 0.284 | 0.76 | 0.041 | 0.33 | 0.598 | 0.206 | |

D151 | 0.019 | 0.025 | 0.225 | 0.79 | 0.039 | 0.34 | 0.598 | 0.206 | |

D218 | 0.013 | 0.013 | 0.050 | 0.98 | 0.014 | 0.49 | 0.550 | 0.098 | |

D262 | 0.021 | 0.028 | 0.264 | 0.76 | 0.041 | 0.33 | 0.598 | 0.206 | |

D8 | D8idp | 0.101^{j} | 0.136 | 0.869 | 0.35 | 0.065 | 0.32 |

↵

*a*A general linear model controlling for population structure.↵

*b*A mixed model controlling for both population structure and kinship.↵

*c*A general linear model that corrects for population structure and tests for the effect of*D8*idp (see footnote*h*) and an additional SNP (see footnote*i*).↵

*d*Average SNP*P-*value over all 10 matrices for a five-group population structure.↵

*e*SNP*P-*value considering the most likely population structure.↵

*f*SNP*P-*value adjusted for multiple tests from 10,000 permutations (TASSEL software).↵

*g*Part of the phenotypic variance explained by the SNP factor.↵

*h**P-*value for*D8*idp including a SNP as a covariate.↵

*i**P-*value for each SNP including*D8*idp as a covariate.↵

*j*Average*P-*value reported in Camus-Kulandaivelu*et al*. (2006).