TABLE 1

Empirical type I error based on 5000 replicates with different rates of missing genotypes

Type I error at a nominal type I error of
Marker typeMissing rate0.050.010.005
SNP00.0590.0130.0054
0.10.0520.01020.0034
Microsatellite00.0430.00840.003
0.10.0380.00760.0028
Haplotype00.0490.0090.0032
0.10.0400.00660.0018