TABLE 3

Polymorphism and neutral test of different groups of the Pi-ta gene

Total sitesSπθTajima's DFu and Li's D (with outgroup)Fay and Wu's H
All O. rufipogon
Entire gene4306720.001960.004101.86739*2.60794*−0.83721
    Coding2787240.000890.002071.89395*−2.086642.17759
        N-terminal705130.002290.00429−1.43175−0.006161.37209
        NBS35730.000500.00193−1.57449−1.725550.17336
        LRR103260.000600.00156−1.669472.71653*0.54334
    Intron1519440.003450.007601.90876*2.47935*−3.01480
H1
Entire gene430620.000120.00018−1.31009−1.262080.42857
    Codinga278710.000090.00014−1.05482−2.089930.21429
        LRR103210.000240.00037−1.05482−1.262080.21429
    Intron151910.000170.00026−1.05482−1.262080.21429
H2
Entire gene4306600.001470.003572.19527**2.39754*−1.36508
    Coding2787220.000680.001912.18652*−1.988191.79365
        N-terminal705120.001780.00416−1.80016−0.057681.15873
        NBS35730.000610.00203−1.56135−1.643570.20952
        LRR103250.000320.001171.89379*2.66924*0.31746
    Intron1519420.003210.007592.07182*−2.22887−3.15873
  • Significance levels were determined by 10,000 random coalescent simulations on the basis of the number of alleles and the observed number of segregating sites. S, number of segregating sites; π, nucleotide diversity; θ, Watterson's estimator, 4Neμ. Italics indicate the significant statistics. *P < 0.05; **P < 0.01.

  • a The N-terminal and NBS of H1 have no variation, so these two parts were not included.