TABLE 2

Per-locus summaries of codon bias and of per-base-pair estimates of the population recombination parameter and gene conversion based on the Ohio sample

LocusFopENCGCγPU (2lnL interval)γUUPP-GC/ATρLDhatρH01ρH01+ff
Cre-C25F6.30.60637.390.47−0.16 (−2.5, 2.08)< −100.000440.000620.000620
Cre-dpy-80.67040.160.52−0.13 (−1.74, 1.45)0.900.001820.002220.002220
Cre-C34F6.10.51342.390.450.49 (−1.69, 2.98)ND0.000000.000000.000000
Cre-col-1750.74337.160.550.67 (−1.18, 2.83)1.160.009220.016140.0005813.5
Cre-vit-20.89125.530.532.19 (0.52, 4.75)−0.100.012410.017780.0004718.5
Cre-lam-20.60337.220.470.26 (−1.01, 1.58)0.240.019580.026120.026120
Cre-ncr-10.47345.970.44−0.64 (−5.5, 3.04)−0.640.000000.000000.000000
Cre-slo-20.34750.430.42−0.52 (−2.33, 1.11)1.230.001070.000000.000000
Cre-col-1840.79333.320.600.25 (−0.88, 1.43)−1.450.008820.017890.017890
Cre-pgp-120.37448.430.420.68 (−0.24, 1.68)−0.150.025270.039530.002089.0
Cre-pgp-130.44747.540.440.64 (−0.27, 1.62)−1.350.000000.003000.001500.5
Cre-pcca-10.67738.170.490.86 (−0.55, 2.49)0.000.021550.039420.002328.0
Cre-nmy-10.53548.070.460.37 (−1.37, 2.24)−0.670.040840.081900.0029213.5
Cre-glit-10.41052.040.450.11 (−1.15, 1.39)−2.780.035720.050000.016681.0
Cre-asp-30.81628.800.520.81 (−0.59, 2.42)−1.350.000000.000000.000000
Cre-spc-10.70238.620.47−1.27 (−3.58, 0.5)ND0.000000.000000.000000
Cre-K10C2.10.63639.410.461.18 (−0.17, 2.82)0.730.000000.000000.000000
Cre-mbk-10.41356.650.460.42 (−0.88, 1.8)−1.860.010790.018160.0005217.0
Cre-col-410.79034.790.571.16 (−0.37, 3.07)−0.490.008600.016490.0004617.5
Cre-myo-2 exon 80.76734.440.514.86 (−0.14, >10)ND0.00000NDNDND
Cre-T21B6.30.63234.410.520.37 (−1.16, 2.02)3.160.003920.004480.004480
Cre-lfi-10.55741.530.45−0.23 (−1.53, 1.04)−0.140.011940.019040.0006015.5
Cre-col-190.87733.950.600.77 (−0.77, 2.55)1.430.000000.000000.000000
Cre-cht-10.59437.190.460.15 (−0.77, 1.09)1.490.000000.001970.000332.5
Cre-spc-10.69733.860.481.06 (−1.16, 4.05)< −100.000000.031510.031510
Cre-myo-2 exon 70.72635.860.490.64 (−3.04, 5.5)−1.430.006550.032760.032760
Cre-pgp-140.57143.700.430.78 (−0.37, 2.07)−0.230.001250.006480.0003010.5
Cre-Y102A11A.80.37643.090.410.49 (−0.5, 1.55)−0.130.007780.012000.0003616.0
Cre-ifa-10.72333.600.491.45 (−0.2, 3.67)−1.110.003340.007130.0002216.0
Cre-dgn-10.74037.110.501.04 (−0.36, 2.73)−0.140.006130.009720.009720
Cre-F42D1.2.10.68838.850.50−0.09 (−1.26, 1.06)−0.740.023750.030290.0010114.5
Cre-sym-40.40855.330.480.21 (−0.93, 1.38)−1.570.003990.005050.000308.0
Cre-D1005.10.57745.710.480.27 (−0.5, 1.06)0.190.018390.026410.0007517.0
Cre-W07E11.10.62141.290.472.69 (−0.74, >10)1.400.023970.047690.047690
Cre-mrp-40.39344.880.410.63 (−0.77, 2.18)0.000.003570.006120.0002014.5
Cre-F47A4.50.41450.410.450.14 (−1.54, 1.88)−0.320.006260.007480.007480
Cre-let-20.81036.380.58>10 (0.19, >10)ND0.03516NDNDND
Cre-alg-10.58544.870.490.52 (−0.65, 1.78)−0.550.009500.015490.015490
Cre-apa-20.55148.540.47−0.30 (−1.61, 0.94)0.370.008380.012980.012980
Cre-E01G6.10.52241.430.47−0.04 (−1.08, 1)−2.530.001310.002250.002250
Average0.60740.960.4830.44 (0.23, 0.65)a−0.37 (−0.71, −0.04)a0.009280.016000.006395.6
  • ND, no data.

  • a Combined maximum-likelihood estimates across all loci.