TABLE 2

Significant QTL and effects

WisconsinFlorida
QTLaEffectb% variancecQTLEffect% variance
BARE1.119f0.212.1
BARE3.74w−0.602.1BARE3.71f−0.232.5
BARE4.74w0.642.5
BARE4.100f0.387.3
BARE5.70w0.551.8
BARE7.127w−0.421.0
BARE8.50w−0.571.8
BARE10.46w−0.813.1
BARE10.67f0.212.1
BRLG1.142f−3.2 cm2.9
BRLG3.70w−5.7 cm5.0BRLG3.83f−3.7 cm3.7
BRLG4.66w−4.0 cm2.5BRLG4.75f−2.3 cm1.7
BRLG7.0f3.5 cm3.6
BRLG8.51f3.2 cm2.8
BRLG9.59f−2.1 cm1.3
BRLG10.46w−8.3 cm9.1
BRNO1.13w−0.402.0
BRNO1.40f−0.605.2
BRNO1.78w−0.321.0
BRNO1.116w−0.614.0
BRNO1.196w−0.331.4
BRNO2.81w−0.503.1BRNO2.82f−0.848.8
BRNO3.133f−0.472.4
BRNO4.29f−0.714.9
BRNO5.22w−0.442.2
BRNO5.75w−0.614.3BRNO5.66f−0.766.4
BRNO7.2w−0.120.4
BRNO8.41w−0.361.6
BRNO9.24w−0.140.6
BRNO9.77f−0.452.5
BRNO10.48w0.341.2
COBD1.64w1.4 mm6.5COBD1.38f0.8 mm3.9
COBD1.153f0.7 mm2.8
COBD2.136f0.6 mm2.5
COBD3.72f0.3 mm0.6
COBD3.93f0.5 mm1.1
COBD4.31w0.5 mm0.5COBD4.30f0.8 mm4.2
COBD4.48w0.7 mm2.0
COBD4.102f1.0 mm6.5
COBD5.73w1.1 mm4.9COBD5.68f0.9 mm5.8
COBD6.36w−0.1 mm0.9
COBD7.100w−0.1 mm1.4
COBD8.40w−0.8 mm2.3
COBD9.52f0.6 mm2.8
COBD10.45w0.9 mm2.4COBD10.47f0.8 mm5.0
CULM1.0w−1.2 mm2.4CULM1.0f−1.5 mm7.1
CULM1.92w−1.7 mm4.1
CULM1.186w1.2 mm1.9
CULM2.87w1.8 mm5.0
CULM3.43w−1.3 mm2.5
CULM3.83f−1.0 mm2.8
CULM4.70w1.0 mm1.5
CULM5.75w2.3 mm8.2
CULM7.89w−1.0 mm1.6
CULM7.123f1.0 mm3.3
CULM9.59w−1.2 mm2.2
CULM10.46w−2.5 mm7.1
CUPR1.152w1.73.8CUPR1.146f1.76.2
CUPR3.120f1.54.6
CUPR3.149w1.53.7
CUPR7.86f1.65.0
CUPR9.28f1.55.0
CUPR10.56w1.63.6CUPR10.42f1.76.2
GLUM1.145w−0.62.2GLUM1.146f−0.83.8
GLUM3.70w−0.94.5GLUM3.51f−0.51.9
GLUM4.28f−0.74.3
GLUM4.61w−1.724.4GLUM4.61f−2.427.9
GLUM4.108w−0.72.6GLUM4.103f−0.83.7
GLUM5.104w−0.41.1
GLUM6.10w0.10.4
GLUM9.56w−0.72.6GLUM9.60f−0.51.7
GLUM10.46w−1.310.2
INFL1.59w−10.6 mm2.0
INFL1.100f−7.4 mm3.2
INFL1.148w−15.4 mm4.0
INFL3.47f−5.3 mm1.5
INFL3.70w−18.3 mm5.7
INFL4.52w−9.5 mm1.4INFL4.63f−7.0 mm2.7
INFL4.98w−10.5 mm1.8
INFL5.161w−9.8 mm1.7INFL5.165f−6.2 mm2.1
INFL7.116f7.0 mm2.8
INFL9.48w−16.7 mm4.7
INFL10.42f10.9 mm7.0
NAKERN2.90f2.7 mg2.8
NAKERN3.122f9.1 mg23.9
NAKERN4.50f29.4 mg2.7
NAKERN4.115f11.5 mg1.8
NAKERN8.85f9.5 mg8.8
NAKERN9.66f1.6 mg7.2
LBIL1.142f−0.52 cm3.4
LBIL2.82w0.31 cm2.6
LBIL3.70w−0.80 cm5.9LBIL3.83f−0.69 cm4.9
LBIL4.66w−0.61 cm3.5LBIL4.77f−0.62 cm5.6
LBIL5.53f−0.48 cm2.6
LBIL5.82w−0.02 cm1.7
LBIL6.80f−0.50 cm3.5
LBIL9.76f−0.53 cm3.2
LBIL10.45f−0.61 cm4.2
LBIL10.63w−0.74 cm5.2
LBNN1.106w0.402.3LBNN1.102f0.281.8
LBNN2.58w0.341.5LBNN2.57f0.454.7
LBNN3.138f0.111.4
LBNN4.80w0.382.4LBNN4.91f0.383.4
LBNN7.26f0.051.1
LBNN7.125w−0.503.9
LBNN9.55w−0.311.6
LBNN10.47w−0.9010.3
LCS1.42w1.4 cm7.5LCS1.41f1.2 cm4.6
LCS1.131f−1.1 cm7.0
LCS2.87w−0.9 cm3.1
LCS3.73f1.2 cm6.1
LCS4.124w−0.3 cm1.2
LCS5.24f0.6 cm2.6
LCS5.102w0.7 cm1.9
LCS5.158f0.4 cm1.7
LCS6.46f0.5 cm1.6
LCS6.96w0.7 cm1.9LCS6.94f0.9 cm2.5
LCS7.24w0.8 cm2.0
LCS7.1271.0 cm2.4
LCS8.0w0.4 cm1.7
LCS9.16−0.1 cm1.4
LCS9.108w0.0 cm1.2
LCS10.380.1 cm1.2
LCS10.56w−0.1 cm1.2
LIBN2.48w−0.482.0LIBN2.57f−0.193.2
LIBN3.78w−0.795.1
LIBN6.98w−0.552.5
LIBN7.6w−0.372.0
LIBN7.121f0.162.1
LIBN9.51w−0.542.2
LIBN10.59w−0.776.5
PLHT1.47f−5.5 cm2.2
PLHT1.84w−6.6 cm2.0
PLHT1.129w−10.9 cm5.2PLHT1.134f−9.4 cm5.9
PLHT2.70f−3.6 cm2.0
PLHT2.87w−4.3 cm0.9
PLHT3.77w−12.4 cm7.7PLHT3.71f−12.3 cm10.7
PLHT3.165w−3.4 cm0.8
PLHT4.75w−7.8 cm2.9PLHT4.71f−5.9 cm2.2
PLHT5.23f−9.5 cm6.2
PLHT5.34w−9.2 cm3.7
PLHT6.91w−5.2 cm1.9
PLHT7.14w−8.1 cm3.8PLHT7.13f−6.6 cm2.9
PLHT7.113w−7.6 cm2.8
PLHT8.28w−8.0 cm3.7
PLHT9.67w−10.5 cm6.8PLHT9.59f−6.1 cm2.3
PLHT10.42w−9.0 cm3.2
PLHT10.79w−4.1 cm0.8PLHT10.78f0.6 cm1.1
POLL1.5f−1.1 days1.9
POLL1.84w−1.5 days2.8
POLL1.155w−1.5 days3.0
POLL2.37w−1.2 days1.8POLL2.42f−0.5 days2.4
POLL3.77w−2.2 days5.3POLL3.70f−1.8 days6.2
POLL3.165f−0.9 days1.4
POLL4.118w−0.4 days1.5
POLL5.22w−0.3 days1.3
POLL5.168f0.2 days2.1
POLL6.56f−0.5 days1.9
POLL6.88w−0.9 days1.7
POLL7.44w1.3 days2.0POLL7.42f1.3 days3.1
POLL7.106f1.0 days2.1
POLL8.52w−0.1 days0.6
POLL9.59w−2.1 days9.4POLL9.46f0.2 days1.4
POLL10.47w−5.4 days22.9
PROL1.80w−0.163.8PROL1.67f−0.145.2
PROL2.123f−0.124.6
PROL3.80w−0.081.9
PROL4.116w−0.092.8
PROL5.53w−0.122.7PROL5.64f−0.153.4
PROL7.120w0.041.1
PROL10.52w−0.142.0
RANK1.53w0.34.3RANK1.50f0.33.6
RANK3.77w0.33.9
RANK3.166w0.32.8
RANK4.67w0.43.6
RANK4.107w0.33.1RANK4.102f0.511.6
RANK5.94w0.11.8
RANK8.29w−0.32.1
RANK10.37w0.32.8RANK10.47f0.48.9
SPKLT1.9w0.15 mm1.0SPKLT1.9f0.34 mm6.2
SPKLT1.52w0.24 mm2.6
SPKLT1.153w0.12 mm0.7
SPKLT1.194w0.14 mm1.3
SPKLT2.23w0.33 mm7.0SPKLT2.10f0.23 mm2.2
SPKLT2.45f0.27 mm3.4
SPKLT2.122w0.22 mm3.3
SPKLT3.145w−0.15 mm1.4
SPKLT4.77w0.21 mm2.6
SPKLT6.81w0.29 mm4.5SPKLT6.73f0.25 mm3.0
SPKLT8.85w−0.13 mm1.0
SPKLT9.50w0.25 mm2.4
SPKLT9.78w0.10 mm0.5
SPKLT10.7w0.18 mm1.8
SPKLT10.46f−0.24 mm3.1
SPKLT10.77w−0.13 mm1.0
STAM1.148w−0.2010.0STAM1.154f−0.035.0
STAM3.66w−0.2616.3STAM3.68f−0.036.4
STAM4.50w−0.092.4
STAM4.110w−0.081.7
STAM5.70w−0.134.1
STAM5.158f−0.023.2
STAM9.49w−0.124.0STAM9.51f−0.036.8
STAM10.104f−0.021.7
TBN1.0f−4.03.2
TBN1.38w−3.71.2
TBN1.112w−3.91.7
TBN1.150f−2.61.6
TBN1.178w3.51.3
TBN1.196f3.11.8
TBN2.41w−7.45.3TBN2.39f−3.84.6
TBN2.117w−2.70.9
TBN3.6f−2.32.1
TBN3.40w−3.41.3
TBN3.72f−9.018.3
TBN3.89w−6.84.4
TBN4.63f−2.41.9
TBN4.100w1.80.5
TBN5.19f−3.11.7
TBN5.105w−11.813.5TBN5.110f−4.24.0
TBN6.35f−2.81.6
TBN6.100w−8.06.7TBN6.94f−2.21.7
TBN6.116f−2.93.1
TBN7.43w−4.01.7TBN7.34f−1.42.3
TBN7.111w3.10.9
TBN8.25w−5.83.3TBN8.25f−3.64.4
TBN8.114f−2.52.6
TBN9.23f2.31.4
TBN9.72f−4.03.2
TBN10.48w−5.52.7
TBS1.0f−0.7 cm2.1
TBS1.38w−0.8 cm1.6TBS1.33f−0.6 cm1.5
TBS1.125w−0.9 cm2.4
TBS1.146f−1.1 cm4.3
TBS1.198f0.9 cm2.8
TBS3.72f−1.6 cm10.5
TBS3.91w−1.2 cm3.7
TBS4.53w−0.8 cm1.7TBS4.55f−1.1 cm3.3
TBS5.16f−1.1 cm5.2
TBS5.113w−1.0 cm2.7TBS5.116f−0.9 cm3.3
TBS5.154w−0.7 cm1.3
TBS6.11w0.7 cm1.2
TBS7.126w1.0 cm2.6TBS7.117f1.0 cm4.6
TBS9.51w−0.7 cm2.7
TBS9.78w−1.0 cm1.7TBS9.78f−1.7 cm11.4
TBS10.47w−1.4 cm5.7
TILL1.32w0.251.4
TILL1.146w−0.617.7TILL1.158f−0.052.2
TILL2.77w−0.392.3
TILL2.100w−0.421.8
TILL3.141w−0.311.9
TILL5.80w−0.413.6
TILL6.35f−0.041.5
TILL7.7w−0.373.0
TILL8.58w−0.312.1
TILL10.49w−0.494.2
  • QTL from Wisconsin and Florida with overlapping 1-LOD drop-off intervals are listed on the same line.

  • a The QTL names are a concatenation of the trait, chromosome number, and chromosome position of each locus.

  • b Average effect of substituting a teosinte allele with a second maize allele.

  • c Proportion of the phenotypic variance explained by the locus (R2).