TABLE 3

Location of the significant DArT markers associated with stem rust in ESWYT set 1 (ESWYTs 1, 6, 10) and ESWYT set 2 (ESWYTs 20 and 24) using linear mixed model 1 (LMM1) and linear mixed model 2 (LMM2) for each chromosome and the reported Sr genes and QTL

Short arm (S)Long arm (L)Unknown arm
ChromosomeDArT (wPt)Sr gene and QTLDArT (wPt)Sr gene and QTLDArT (wPt)Sr gene
1A
1B8949, 1328, 3465, 4434, 6427, 8986, 1781, 5065, 2614, 5678, 5363, 6777, 5801, 6117, 6833, 8616Sr31Sr141139, 2019, 1589
1DSr45Sr33Sr18
2ASr38Sr21Sr32, -34
2B0100, 9402Sr19, -23, -36, -40Sr9a, -9b, -9d, -9e, -9f, -9g, -16, -20, -28Sr10, -32, -34, -39
2DSr6
3A5662Sr35Sr27
3B0365, 0995, 5716, 7015, 8352, 8993, 9170, 5105, 6802,Sr2, -12
3DSr24
4A27882084, 3795, 7807, 4487Sr375434
4B8650Sr7a, -7b
4DSr41
5A
5B4996
5DSr30
6ASr8a, -8b7623Sr13, -26
6B7662, 1922, 3130, 9990, 6994, 8239, 4720, 3304, 1852, 7777, 37330171, 9256, 1541Sr111541, 5596
7ASr15, -224748
7B1149, 5343, 0600Sr17 QTLa
7D2565Sr44Sr253923, 5674
  • The locations of Sr genes as per the USDA–ARS Cereal Disease Lab (http://www.ars.usda.gov/Main/docs.htm?docid=10342) and other publications are shown. The significant DArT markers and Sr genes with unknown location are given in the last two columns. Underlined genes are not present or not known to be present in the lines included in this study.

  • a Faris et al. (1999).