TABLE 2

Location of the significant DArT markers associated with leaf rust found in ESWYT set 1 (ESWYTs 1, 6, 10) and ESWYT set 2 (ESWYTs 20 and 24) using linear mixed model 1 (LMM1) and linear mixed model 2 (LMM2) for each chromosome and the reported Lr genes and QTLs

Short arm (S)Long arm (L)Unknown arm
ChromosomeDArT (wPt)Lr gene and QTLDArT (wPt)Lr gene and QTLDArT (wPt)Lr gene
1A5374f, 2872, 4029, 6709Lr108016, 0128
1B1328, 3465, 4434, 0974, 6427, 8986, 1781, 5065, 2614, 5678, 5363, 6777, 5801, 6117, 6833, 8616, 2315Lr26, QTLab0944, 2526, 4129Lr462019, 5316, 1139Lr33, -44, -55, -51
1DLr21c QTLa3743Lr40, -42, -43
2A3114Lr17a, -17b, -35, -45Lr386207Lr11
2B0100, 8326Lr13, -16, -23 QTLdef0049Lr500094, 4559Lr35
2DLr2a, -2b, -2c, -15, -22a, -22b, -39, -41, QTLfLr54
3A1562, 9268, 1688QTLd
3B0365, 7015, 7142, 5716, 9310, 9170, 6047, 5105, 6802, 5769, 0384, 8096Lr27
3D1336, 9401Lr24Lr32
4A4620Lr285434, 7924Lr25
4B1272, 3908Lr12, -31 QTLdLr30
4DQTLd
5A06054249
5BLr52g3569, 4996, 5896, 3030, 9598Lr184703
5D1400Lr1
6A7475, 0864, 8006, 7938, 90754229Lr56
6B3130, 4720, 3733Lr36, -53Lr3a, -3bg, -3ka, -9
7A6034, 8789Lr47Lr204553
7B7887, 4300, 0600, 7108Lr14a, -14b, QTLadf9746
7D1269, 3328Lr29, -34Lr190934, 5150, 0366
  • The locations of Lr genes as per the USDA–ARS Cereal Disease Lab (http://www.ars.usda.gov/Main/docs.htm?docid=10342) and other publications are shown. The significant DArT markers and Lr genes with unknown location are given in the last two columns. Underlined genes are not present or not known to be present in the lines included in this study.

  • a William et al. (1997).

  • b Schnurbusch et al. (2004).

  • c Huang et al. (2003).

  • d Messmer et al. (2000).

  • e Nelson et al. (1997).

  • f Xu et al. (2005).

  • g Hiebert et al. (2005).