Probability^{a} | Value^{b} | appendix equation |
---|---|---|

P(y = 0 | _{k}π = 1)_{n}^{c} | A1 | |

P(y = 0 | _{k}π = [0 | 0]′)^{d} | A3 | |

P(y_{1} = 0 | π = [ | 0]′)^{e} | A2 | |

P(y = 1 | _{k}π) | 1 − P(y = 0 | _{k}π) |

↵

*a*Where possible, the position of the marker*k*is denoted by “|” within the vector of IBD and non-IBD segments**π**.↵

*b**N*, effective population size;*u*, mutation rate. Note that 4*Nu*may be approximated by marker heterozygosity,*H*, if_{k}*u*is unknown.↵

*c**k*is on an IBD segment of size*c*(note that*k*may be right at the edge of this segment).↵

*d**k*is in between two non-IBD segments, each of size*c*.↵

*e*The marker is at the start of the chromosome and next to a non-IBD region of size*c*. Due to symmetry, the same Equation applies at the end of the chromosome.