TABLE 2

Probabilities for various identity-by-state modes, given modes of identity-by-descent when the individuals being compared belong to a subpopulation of the population from which the allele frequencies are estimated

IBS modeAllelic stateIdentity-by-descent mode
S1S2S3S4S5S6S7S8S9
Embedded ImageAiAi, AiAiEmbedded ImageEmbedded ImageEmbedded ImageEmbedded ImageEmbedded ImageEmbedded ImageEmbedded ImageEmbedded ImageEmbedded Image
Embedded ImageAiAi, AjAj0Embedded Image0Embedded Image0Embedded Image00Embedded Image
Embedded ImageAiAi, AiAj00Embedded ImageEmbedded Image000Embedded ImageEmbedded Image
Embedded ImageAiAi, AjAk000Embedded Image0000Embedded Image
Embedded ImageAiAj, AiAi0000Embedded ImageEmbedded Image0Embedded ImageEmbedded Image
Embedded ImageAjAk, AiAi00000Embedded Image00Embedded Image
Embedded ImageAiAj, AiAj000000Embedded ImageEmbedded ImageEmbedded Image
Embedded ImageAiAj, AiAk0000000Embedded ImageEmbedded Image
Embedded ImageAiAj, AkAl00000000Embedded Image
  • As in Table 1, alleles with different subscripts are distinct.