TABLE 6

Patterns of synonymous and nonsynonymous changes on the neo-sex chromosomes of D. miranda since the split with D. pseudoobscura

FixedPolymorphic
P-UU-PP-PU-UTotalNsP-UU-PP-PU-UTotalNs
Neo-X/D. pseudoobscura
Alk300140000000
Asx100231110241
CG11136400040710190
CG11159000000000110
CG13437000220000110
CG30152000000000000
cnk010120500383
cos100341000111
grau130264100121
Lcp1000000200022
nompA120140210256
Pcl130153200020
sax300251200350
stan13015215409286
Toll-760006011003143
tud010128200022
UbaI010120010342
Updo000000000000
vlc000226100010
Total221402056265180308927
Neo-Y/D. pseudoobscura
Alk200243000000
Asx100015000001
CG11136700076000110
CG11159000110000000
CG13437000111000000
CG30152000000000000
cnk200131000000
cos200356000001
grau010343000000
Lcp1100014000001
nompA1205815000001
Pcl4303106000110
sax400263000000
stan8201117000001
Toll-7110031412000001
tud70041116000001
UbaI420174000000
Updo000442000000
vlc200358000000
Total5610037103102000227
  • Ns, nonsynonymous. We used D. pseudoobscura for comparison and D. affinis to infer the ancestral state. The D. pseudoobscura preferences table (Akashi and Schaeffer 1997) was used to establish the major codons.