TABLE 2

Estimated type I error rates for the nonlinear test statistics (10,000 simulations)

Sample sizeEntropyExponentialQuadraticReciprocal
Two-SNP haplotypes (Embedded Image = 0.05)
1000.04600.05140.05480.0544
2000.05100.05080.05460.0544
3000.05600.04860.05320.0490
4000.05700.04760.05080.0538
5000.05400.05000.04960.0524
Six-SNP haplotypes (Embedded Image = 0.05)
1000.04500.05300.05440.0522
2000.04900.05080.04760.0490
3000.05020.04780.05180.0508
4000.05080.04880.04760.0508
5000.05000.04980.04620.0512