TABLE 2

Haplotype distribution at 6p22

Polymorphic site positionFrequency
111111111
111111122222222333344444555555555666777777888888888999999000000000
011246902345668023402566012355669678167788012235679046788001123357
137858592930486321219729170656899069926609171469675542249140743553
345087065329582549755915485091085720230198145656744283884081114579TotalAf.Non-Af.Eu.As.
Ancestor:CATAAAATTACGCTCACCAGGAAATTTCGTCTACACCCCAATGCGCTGTATCTAATGTGAGAAAGC
Orangutan:........................Y..........................T..............
Gorilla:.................................T............................G...
Chimpanzee:..................................................................
Haplotype
1...G.....G......A..............CGTG..T.........A....C.........G..T11
2....G...........................G......G......................G...11
3.G..GG..............TG..........G.G...TG..................A...G...11
4................................G......G......................G...44
5...G.....G......................GTG..T.........A..............G..T72514
6...............G..G...C.........G......G...................G..G...11
7......................C.........G....T....T...C..G............G...11
8......................C...G.....G......G......................G...11
9..C.............................G....T......................A.G...22
10...G......G..........T..........G......G......................G...44
11...G..........A..............C..GTG..T.........A..C...........G..T22
12...G............................GTG..T.........A..............G..T11
13...GG................T..........G......G......................G...11
14...G............................GTG..T.........A..C...........G..T4311
15...G....C.......................GTG..T.........A..............G..T11
16....G................T..........G..A...G.G...............G....G...11
17T..GG....G...C..................G.G.T........G.A..............G..T11
18.......G.........T.....G........G......G...............G......G...11
19....................T...........G......G......................G...4222
20...G.....G......................G.G..T.......................GG...11
21....G...............T...A.......G......G......................G...22
22.........G..........T...........G......G......................G...11
23..CG.....G......................G.G..T......T.................G..T11
24...........A....................G....T.........AC.............G.T.11
25...........A.............G......G......G.......AC.............G...11
26...G.....G......................G.G..T.........A...........G..G..T11
27....................T...........G......G......................GT..41312
28...G.....G......A................TG..T.........A..............G..T32321715
29..C.........................A...G....T......................A.G...121293
30...G...............A............GTG..T.........A..C...........G..T111
31...G.....G........................G....GT...............A.....G...111
32..C.........G...............A...G....T......................A.G...111
33....G...............T...........G......G......................G...8835
34..C.........................A.G.G....T......................A.G...111
35...G.....G......A................TG..T.....T...A..............G..T2211
36..........T.........T...........G......G..........................111
37...G.....G......A................TG..T.........A......G.......G..T111
38...G............................G....T.........A..C...........G..T111
39....G...............T.......A...G......G......................G...111
40...G.....G......................GTG....G......................G...111
41...G.....G......A................TG..T.........A.....G........G..T111
42....................T...........G......G..........................111
43...G.....G......A................TG..T.........A...T..........G..T111
44....G....G..........T...........G......G......................G...111
45...G.....G.......................TG..T.........A..............G..T111
46...G.....G......................G.G..T.........A..............G...111
47....G.C.............T...........G......G......................G...111
48...G.....G......A..........T.....TG..T.........A..............G..T111
No. chr12240824042
  • The frequencies of each haplotype in the total, African (Af.), Non-African (Non-Af.), European (Eu.), and Asian (As.) samples are shown in the right columns.