TABLE 4

T3SE by host of isolation likelihood analysis

BrassicaceaeaCaulifloweraChinese cabbageaFabaceaeSoybeanKidney beanTomatoaCucurbitaceaeCucumberPoaceaeaRiceaMoraceaeJapanese apricotaBayberrya
T3SEN102428961165103222
hopA127*****
hopAA1-146*********
hopo1-247*******
hopAB248**
hopM150**
hopF254**
hopAM1-257***
hopQ1-258**
hopX1 (N-term)58**
hopT259*
hopAM1-160*
hopT1-161*
hopE166***
shcA66**
hopAJ167****
hopH169**
hopO1-3′ (N-term)69***
hrpW71*
hopAG172**
hopP172**
hopAK174**
Ipx4774**
PSPTO137875****
hopB176****
PSPTO086977*
hopQ1-178**
CEL ORF479**
hopAO179**
hopN179*
avrE180*
hopS187*
  • P-values from likelihood-ratio test of association model vs. nonassociation model (see Materials and Methods for details). *, 0.1–0.05; **, 0.05–0.01; ***, 0.01–0.001. Only those hosts with two or more isolates were analyzed. The hosts and host families that are not presented in this table did not exhibit any significant associations. Only T3SEs with significant associations are shown. N, number of strains that carry each T3SE and are isolated from each host.

  • a Hosts are grouped on the basis of their taxonomic family.