TABLE 2

VA gene functional categories

All strainsaPhylogroupa
CodeFunctional categoryN12345
aAlginate biosynthesis1797.498.999.197.4100.096.1
cCoronatine biosynthesis1875.676.374.774.788.996.3
fFlagellar apparatus4395.998.795.996.798.893.8
gGeneral secretion pathway1396.899.097.297.6100.097.4
hSiderophore1687.696.384.886.993.881.3
mMetabolism6492.196.993.190.098.090.1
oHemolysin595.498.296.495.695.093.3
pPyoverdine798.6100.0100.099.6100.095.2
qQuorum sensing786.589.686.685.396.490.5
rTranscriptional regulation1086.981.881.278.895.093.3
sPolysaccharide synthesis790.798.787.990.689.395.2
tT3SS apparatus2583.397.681.677.892.073.3
teT3SE putative T3SE and associated genes5376.685.873.474.589.275.5
uUnknown function3677.087.276.773.391.974.5
vType IV pilus2693.094.894.292.498.197.4
yYersiniabactin biosynthesis685.494.782.386.591.761.1
  • a Average percentage of strains carrying genes in each functional category.