Nucleotide diversities at Waxy and 12 flanking genes for O. sativa and O. rufipogon
Silent-site nucleotide diversity (π) | ||||||||
---|---|---|---|---|---|---|---|---|
O. sativa | O. rufipogon: | |||||||
Genea | Genomic position (chromosome 6) (Mb) | indica (N = 21) | temperate japonica (N = 22) | tropical japonica (N = 18) | aus (N = 6) | aromatic (N = 6) | All sativa (N = 73)b | (N = 9) |
1. Hypothetical protein | 1.522 | 0.00236 | 0.00060 | 0.00205 | 0.00147 | 0.00082 | 0.00247 | 0.00259 |
2. Hypothetical protein | 1.565 | 0.00242 | 0.00000 | 0.00000 | 0.00000 | 0.00000 | 0.00071 | 0.00281 |
3. Receptor-like protein kinase | 1.606 | 0.00141 | 0.00048 | 0.00141 | 0.00093 | 0.00149 | 0.00127 | 0.00093 |
4. Expressed protein | 1.636 | 0.00200 | 0.00000 | 0.00446 | 0.00000 | 0.00387 | 0.00238 | 0.00473 |
5. Putative glycosyl hydrolase | 1.688 | 0.00235 | 0.00080 | 0.00313 | 0.00133 | 0.00000 | 0.00351 | 0.00393 |
6. Hypothetical protein | 1.720 | 0.00000 | 0.00034 | 0.00161 | 0.00000 | 0.00328 | 0.00112 | 0.00077 |
7. Waxy | 1.763–1.768 | 0.00594 | 0.00109 | 0.00015 | 0.00279 | 0.00372 | 0.00559 | 0.02127 |
8. Transketolase | 1.810 | 0.00000 | 0.00000 | 0.00000 | 0.00000 | 0.00000 | 0.00000 | 0.00089 |
9. Hypothetical protein | 1.850 | 0.00564 | 0.00155 | 0.00262 | 0.00000 | 0.00570 | 0.00864 | 0.00891 |
10. Expressed protein | 1.878 | 0.00371 | 0.00030 | 0.00037 | 0.00466 | 0.00333 | 0.00435 | 0.00589 |
11. Enolase | 1.933 | 0.00431 | 0.00473 | 0.00755 | 0.00134 | 0.00000 | 0.00905 | 0.00281 |
12. Kinesin-like protein | 1.980 | 0.00395 | 0.00182 | 0.00085 | 0.00407 | 0.00000 | 0.00474 | 0.00245 |
13. Putative ribosome-binding factor | 2.020 | 0.00150 | 0.00019 | 0.00022 | 0.00219 | 0.00000 | 0.00203 | 0.00194 |